species:   Scscl
pid:       PID1625
parent:    Ssc-milR-101
paralog:   
locus:     NW_001820823.1:538936-539032
matures:   ['UGGGAGUUGAAAUCUCCUACGA', 'GUAGGUCGGCAUUUGAGCUUUUGUU']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820823.1:538936-539032

6 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

     ************************                                             ******************     
CAAAUUAUUCGGUGAGUAGGUCGGCAUUUGAGCUUUUGUUAAAGAAGGGGUCCUACCAAGGGUGAUGGGAGUUGAAAUCUCCUACGAGGAUGGUGUG
...(((((((.....(((((..((.((((.(((((((((((......((......)).....))))))))))).)))))))))))..)))))))...
-----------------------------------------------------------------UGGGAGUUGAAAUCUCCUACGA---------- l=22 a=0 c
---------------GUAGGUCGGCAUUUGAGCUUUUGUU--------------------------------------------------------- l=25 a=0 c*
-----------------------------------------------------UACCAAGGGUGAUGGGAGUUGA---------------------- l=22 a=1 ma
---------------GUAGGUCGGCAUUUGAGCUUUUGUU--------------------------------------------------------- l=25 a=0 ma*

-----------------------------------------------------UACCAAGGGUGAUGGGAGUUGA---------------------- l=22 a=1 (ma)

mb-00011
ax-1011111
ku-01
ss-110111111010
fn-111
